PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1145_p8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SBP
Protein Properties Length: 328aa    MW: 37317.3 Da    PI: 9.0499
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1145_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1277.3e-40191268178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +Cq+egC+adls+ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh lsefD++krsCr+rLa+hn+rrrk ++
  RrC1145_p8 191 RCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKCHQ 268
                 6*************************************************************************9865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-35187253IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.223189266IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-37190269IPR004333Transcription factor, SBP-box
PfamPF031104.4E-30192265IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MLDYEWDNPS VIMLSGEDRS HHHHQQQEPD PTRVLSIFDP THTHHNQSSY NNISPPLFSS  60
FSNQQQQLTV YGHQTNNNNN NNQFHPSFLY DPRTTTTYPP SSDSMYGHPH HSALFSFDQT  120
GPGSGSSYNF LIPKTEVDVS RPLDFTSNRI GLNLGGRTYF SAADDDFVSR LYRRSRPGHE  180
LGMGNTLSTP RCQAEGCNAD LSHAKHYHRR HKVCEFHSKA STVVAAGLSQ RFCQQCSRFH  240
LLSEFDNGKR SCRKRLADHN RRRRKCHQSS SKPTPDITTT PRTVTERFGC KVFVVAIQLA  300
SYNFTGMFPS KAVPNNNNTI LFHVSIFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-301922651184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584300.11e-165PREDICTED: squamosa promoter-binding-like protein 8
RefseqXP_013695762.11e-165PREDICTED: squamosa promoter-binding-like protein 8
SwissprotQ8GXL31e-123SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A0D3C6V91e-165A0A0D3C6V9_BRAOL; Uncharacterized protein
STRINGBra033221.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70102743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-108squamosa promoter binding protein-like 8